Data
Official data in SubjectManager for the following academic year: 2024-2025
Course director
Kálai Tamás
professor,
Department of Organic and Pharmacological Chemistry
Number of hours/semester
Lectures: 28 hours
Practices: 14 hours
Seminars: 14 hours
Total of: 56 hours
Subject data
- Code of subject: OTN-ORGC-T
- 5 Credit
- Biotechnology BSc
- Basic Module module
- spring
OTN-GENC-T finished
Course headcount limitations
min. 5 people – max. 50 people
Topic
Starting from saturated, unsaturated, aromatic hydrocarbons, students acquire knowledge of the most important physical and chemical properties of halogen, oxygen, nitrogen and sulfur (organogenic elements) containing compounds, basic relationships, synthetic methods and the biological significance of each group of compounds. A suitable molecular basis is provided to study the basic relationships between chemical structure and biological action.
During the laboratory practice an introduction to organic laboratory equipment and techniques will be provided and some selected characteristic reactions of different functional groups will be investigated.
Lectures
- 1. Introduction to the elements of organic chemistry (functional groups, acids and bases in organic chemistry, structure and bonding, organic reactions, basics of nomenclature); - Bognár Balázs
- 2. Introduction to the elements of organic chemistry (functional groups, acids and bases in organic chemistry, structure and bonding, organic reactions, basics of nomenclature); - Bognár Balázs
- 3. Hydrocarbons I (alkanes, alkenes, alkynes); - Bognár Balázs
- 4. Hydrocarbons I (alkanes, alkenes, alkynes); - Bognár Balázs
- 5. Hydrocarbons II (aromatic compounds, biologically active polyenes – carotenoids, steroids); - Bognár Balázs
- 6. Hydrocarbons II (aromatic compounds, biologically active polyenes – carotenoids, steroids); - Bognár Balázs
- 7. Stereochemistry: isomerism, conformation, configuration, chirality; - Bognár Balázs
- 8. Stereochemistry: isomerism, conformation, configuration, chirality; - Bognár Balázs
- 9. Alkyl halides (physical and chemical properties, nucleophilic substitution, their role in industry and environment); - Bognár Balázs
- 10. Alkyl halides (physical and chemical properties, nucleophilic substitution, their role in industry and environment); - Bognár Balázs
- 11. Alcohols, phenols, ethers (structure, reactions, biological importance); - Bognár Balázs
- 12. Alcohols, phenols, ethers (structure, reactions, biological importance); - Bognár Balázs
- 13. Nitrogen containing compounds (amines - structure, physical, chemical properties, biologically active amines, alkaloids); - Bognár Balázs
- 14. Nitrogen containing compounds (amines - structure, physical, chemical properties, biologically active amines, alkaloids); - Bognár Balázs
- 15. Sulfur containing compounds: thiols and sulfides (physical, chemical properties, importance in biological processes); - Bognár Balázs
- 16. Sulfur containing compounds: thiols and sulfides (physical, chemical properties, importance in biological processes); - Bognár Balázs
- 17. Aldehydes and ketones (structure, physical, chemical properties, reactions, important representatives); - Bognár Balázs
- 18. Aldehydes and ketones (structure, physical, chemical properties, reactions, important representatives); - Bognár Balázs
- 19. Mono-, di- and polysaccharides: structure and biological importance; - Bognár Balázs
- 20. Mono-, di- and polysaccharides: structure and biological importance; - Bognár Balázs
- 21. Carboxylic acids and their derivatives (structure, physical, chemical properties, alpha-position substituted derivatives, di- and polycarboxylic acids, representatives); - Bognár Balázs
- 22. Carboxylic acids and their derivatives (structure, physical, chemical properties, alpha-position substituted derivatives, di- and polycarboxylic acids, representatives); - Bognár Balázs
- 23. Amino acids and proteins; - Bognár Balázs
- 24. Amino acids and proteins; - Bognár Balázs
- 25. Heterocycles (5- and 6-membered heteroaromatic compounds, structure, biologically important representatives, chemical mode of action of coenzymes); Vitamins; Nucleotides, nucleosides, nucleic acids; - Bognár Balázs
- 26. Heterocycles (5- and 6-membered heteroaromatic compounds, structure, biologically important representatives, chemical mode of action of coenzymes); Vitamins; Nucleotides, nucleosides, nucleic acids; - Bognár Balázs
- 27. Summary - Bognár Balázs
- 28. Summary - Bognár Balázs
Practices
- 1. Introduction: general safety rules in organic laboratory, reduction of risks; selected characteristic reactions of alkanes, alkenes, alkynes. Introduction to organic laboratory equipment and techniques I.: synthesis of acetanilide (heating, cooling, stirring, filtration, determination of melting point); - Bognár Balázs
...
- 2. Introduction: general safety rules in organic laboratory, reduction of risks; selected characteristic reactions of alkanes, alkenes, alkynes. Introduction to organic laboratory equipment and techniques I.: synthesis of acetanilide (heating, cooling, stirring, filtration, determination of melting point); - Bognár Balázs
- 3. Introduction: general safety rules in organic laboratory, reduction of risks; selected characteristic reactions of alkanes, alkenes, alkynes. Introduction to organic laboratory equipment and techniques I.: synthesis of acetanilide (heating, cooling, stirring, filtration, determination of melting point); - Bognár Balázs
- 4. Introduction to organic laboratory equipment and techniques II.: preparation of tert-butyl-chloride (extraction, distillation, drying, determination of boiling point), selected characteristic reactions of aromatic hydrocarbons, alkyl and aryl halides, alcohols, phenols and ethers. - Bognár Balázs
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- 5. Introduction to organic laboratory equipment and techniques II.: preparation of tert-butyl-chloride (extraction, distillation, drying, determination of boiling point), selected characteristic reactions of aromatic hydrocarbons, alkyl and aryl halides, alcohols, phenols and ethers. - Bognár Balázs
- 6. Introduction to organic laboratory equipment and techniques II.: preparation of tert-butyl-chloride (extraction, distillation, drying, determination of boiling point), selected characteristic reactions of aromatic hydrocarbons, alkyl and aryl halides, alcohols, phenols and ethers. - Bognár Balázs
- 7. Selected characteristic reactions of amines, aldehydes, ketones and carbohydrates. Isolation of caffeine; thin layer chromatography; - Bognár Balázs
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- 8. Selected characteristic reactions of amines, aldehydes, ketones and carbohydrates. Isolation of caffeine; thin layer chromatography; - Bognár Balázs
- 9. Selected characteristic reactions of amines, aldehydes, ketones and carbohydrates. Isolation of caffeine; thin layer chromatography; - Bognár Balázs
- 10. Selected characteristic reactions of carboxylic acids and carboxylic acid derivatives, some heterocycles, amino acids and peptides. - Bognár Balázs
...
- 11. Selected characteristic reactions of carboxylic acids and carboxylic acid derivatives, some heterocycles, amino acids and peptides. - Bognár Balázs
- 12. Selected characteristic reactions of carboxylic acids and carboxylic acid derivatives, some heterocycles, amino acids and peptides. - Bognár Balázs
- 13. Written test - Bognár Balázs
- 14. Summary, evaluation. - Bognár Balázs
Seminars
- 1. Recognizing functional groups, predicting hybridization and geometry, predicting the direction of acid-base reactions; - Pápayné Sár Cecilia
- 2. Reactivity alkanes, alkenes, alkynes, stability of radicals and carbocations; - Pápayné Sár Cecilia
- 3. Determining aromaticity, reactivity of aromatic compounds, directing rules in practice; - Pápayné Sár Cecilia
- 4. Stereochemistry: recognizing enantiomers, diastereomers, meso isomers, assigning configuration to chiral centers, representing 3D structures on paper (Fischer projection); - Pápayné Sár Cecilia
- 5. Nucleophilic substitution reactions with oxygen, nitrogen, sulphur and carbon centered nucleophiles; - Pápayné Sár Cecilia
- 6. Elimination reactions; - Pápayné Sár Cecilia
- 7. Basicity and nucleophilicity of amines; - Pápayné Sár Cecilia
- 8. Nucleophilic addition reactions on carbonyl compounds; - Pápayné Sár Cecilia
- 9. Drawing the structure of monosaccharides (chiral centers, Haworth projection); - Pápayné Sár Cecilia
- 10. Oxidation reactions of mono- and disaccharides (reducing and nonreducing sugars); - Pápayné Sár Cecilia
- 11. Interconversion of carboxylic acid derivatives; - Pápayné Sár Cecilia
- 12. pI of amino acids, some reactions; - Pápayné Sár Cecilia
- 13. Comparing aromatic heterocycles with benzene; - Pápayné Sár Cecilia
- 14. Summary of organic reactions: recognizing structure (functional groups) and reactivity relationship; - Pápayné Sár Cecilia
Reading material
Obligatory literature
John McMurry, Fundamentals of Organic Chemistry, International edition, 7th ed., 2011, 2007 Brooks/Cole Cengage Learning, Belmont, ISBN-13: 978-1-4390-4973-0; ISBN-10: 1-4390-4973-4
A. Winter: Organic Chemistry 1 for Dummies, 2nd ed., 2016, Wiley, ISBN: 1119293375
Literature developed by the Department
The slides of the lectures will be uploaded to the neptun MeetStreet or Teams files.
The questions discussed in the seminar are also uploaded to Teams.
Notes
Tamás Kálai, Balázs Bognár, Organic Chemistry Laboratory Manual for English Speaking Students, Department of Organic and Medicinal Chemistry, University of Pécs, 2010
Recommended literature
Harold Hart, Organic Chemistry A Short Course, International student edition, 8th ed, 1991 Houghton Mifflin Company, Boston, ISBN: 0-395-62838-5
Dr. James W. Zubrick, Organic Chem Lab Survival Manual: A Student’s Guide to Technics, 11th ed, Wiley; ISBN-13: 978-1119608554, ISBN-10: 1119608554
Conditions for acceptance of the semester
All the practice, seminar and final test must be completed.
Mid-term exams
At the end of the practice a written test must be completed over 50%.
Students write short midterm tests from the questions discussed in the seminar on 3rd, 5th, 7th, 9th and 11th week and at least three of them must be completed better than 50 %. Two midterm test will be written from the subject of the lecture. Those who can complete all (practice, seminar, lecture) tests at least 80 % grade 5 will be proposed.
Making up for missed classes
Students should consult with the lecturer or with the teaching assistant.
Exam topics/questions
1. Aliphatic hydrocarbons: alkanes, alkenes, alkynes; biologically active polyenes – carotenoids, steroids;
2. Aromatic hydrocarbons;
3. Stereochemistry: isomerism, conformation, configuration, chirality;
4. Alkyl and aryl halides: physical and chemical properties, nucleophilic substitution, their role in industry and environment;
5. Alcohols, phenols, ethers: structure, reactions, biological importance;
6. Nitrogen containing compounds: amines - structure, physical, chemical properties, biologically active amines, alkaloids;
7. Sulfur containing compounds: thiols and sulfides (physical, chemical properties, importance in biological processes);
8. Aldehydes and ketones: structure, physical, chemical properties, reactions, important representatives;
9. Mono-, di- and polysaccharides: structure and biological importance;
10. Carboxylic acids and their derivatives: structure, physical, chemical properties, alpha-position substituted derivatives, di- and polycarboxylic acids, representatives;
11. Amino acids and proteins;
12. Heterocycles: 5- and 6-membered heteroaromatic compounds; Nucleotides, nucleosides, nucleic acids; Biologically important representatives;
Examiners
- Bognár Balázs
- Kálai Tamás
- Pápayné Sár Cecilia
Instructor / tutor of practices and seminars
- Bognár Balázs
- Kálai Tamás
- Pápayné Sár Cecilia